Fundamentals of Medical Imaging

Spring 2013

Tuesday, Thursday 12:30 PM to 1:50 PM , NH106

ee4328-5339Spring12/HW3 Medical Imaging Spring13.docx

ee4328-5339Spring12/Medical_Imaging_Spring13TH_EX_II.docx

 

redballt.gif (398 bytes)Instructor:  Kambiz Alavi, PhD, Professor, Electrical Engineering

    alavi@uta.edu, 524 Nedderman Hall, 817/272-5633, fax 817/272-2253

Office Hours:  Tu-Th 2:00-3:30 PM

 

redballt.gif (398 bytes)GTA:  Md. Motasim Bellah  md.bellah@mavs.uta.edu

 

 Office Hours: 

 

SYLLABUS_Medical_Imaging Spring 2013.doc

 

WEEK 1:

 

Introduction                                          Lec_Jan_15_2013KA1.ppt

 

Imaging Modalities                                http://www.eecs.umich.edu/~dnoll/BME516/intro.pdf

 

History of Medical Imaging                    http://fmri.ucsd.edu/ttliu/be280a_10/BE280A10_intro.pdf

 

Modalities Resolution Noise                  Modalities resolution.docx

 

X-rays 1   ee4328-5339Spring12/Lec_Xray1Fe_05_04.pdf

 

WEEK 2:

 

X-rays 2  ee4328-5339Spring12/Lec_Xray2Fe_10_04_.pdf

 

 

WEEK 3 and 4:

Linear System notes by Alavi.pdf

http://cfmriweb.ucsd.edu/ttliu/talks/BE280B_05_sys1.pdf

 

Fourier Series

http://www-ee.uta.edu/Online/Alavi/ee2347/Orthogonal%20functions-Sin%20and%20Cos.pdf

http://www-ee.uta.edu/Online/Alavi/ee2347/Fourie%20Series.pdf

http://www-ee.uta.edu/Online/Alavi/ee2347/Fourier%20Series%20Examples.pdf

http://www-ee.uta.edu/Online/Alavi/ee2347/Box%20Train%20Fourier%20Series%20and%20Spectrum.pdf

 

 

2-d linear systems 

 

http://cfmriweb.ucsd.edu/ttliu/talks/BE280B_05_sys2.pdf

 

http://www.eecs.umich.edu/~fessler/course/516/l/c2-linsys.pdf

 

 

Fourier Transform

ee5359_bme5300/2006spring/Signals & Systems Med-Img.pdf

 

 Fourier Transform Pairs by Poularikas and Seely.pdf

 

http://www.ysbl.york.ac.uk/~cowtan/fourier/fourier.html

http://www.ysbl.york.ac.uk/~cowtan/fourier/ftheory.html

 

http://www.eecs.umich.edu/~dnoll/BME516/ftnotes.pdf

 

ee4328-5339Spring12/2dCylindricalFourier.PDF

 

http://www.physics.usyd.edu.au/~fvon4093/fourier-transform-symmetry.pdf

 

http://lmb.informatik.uni-freiburg.de/papers/download/wa_report01_08.pdf

http://www.cs.technion.ac.il/~elad/publications/journals/2004/30_PolarFFT_ACHA.pdf

http://www.cs.tau.ac.il/~amir1/PS/Polar_Paper_New.pdf

 

WEEK 5:

Computed Tomography Simple              http://www.colorado.edu/physics/2000/tomography/projections.htmlEEK 4:

Color ee4328-5339Spring12/LecXrayCT1_Fe_12_04.pdf

 Black and white

ee4328-5339Spring12/LecXrayCT1_Fe_12_04_handouts.pdf

 

WEEK 5:

WEEK 6:

 

 

ee4328-5339Spring12/Lec_XrayCT2Fe_17_04.pdf

 

http://www.aapm.org/meetings/02AM/pdf/8372-23331.pdf

 

MATLAB ASSIGNMENT

Matlab_FFT_Exercise_1

Matlab_FFT_Exercise_2

 

WEEK 7:

MedImSp12HW2.doc

 

 ee4328-5339Spring12/LecXrayCT3_Fe_19_04_.pdf

 

http://www.sv.vt.edu/xray_ct/parallel/Parallel_CT.html

ee4328-5339Spring12/FB.ppt

 

http://www.sv.vt.edu/xray_ct/parallel/Matlab_Prog.html

Transforms (Image Processing Toolbox).pdf    http://www-rohan.sdsu.edu/doc/matlab/toolbox/images/transfo9.html

 

2011. 1010. RADON_TRANSFORM_Easy_principles.ppt

Radon Transform.pdf

The Filtered Backprojection.docx

http://opax.swin.edu.au/~dliley/lectures/het408/backproj.pdf

http://opax.swin.edu.au/~dliley/lectures/het408/fbe.pdf

http://web.eecs.umich.edu/~dnoll/BME516/ct1.pdf

 

 

WEEK 8 and9:

 

http://opax.swin.edu.au/~dliley/lectures/het408/mri.pdf

 

http://www.revisemri.com/

 

 

HW1_solution_MedIm

http://cfmriweb.ucsd.edu/ttliu/BE280A_12.html

 

http://cfmriweb.ucsd.edu/ttliu/talks/ece187_04.pdf

http://cfmriweb.ucsd.edu/ttliu/talks/NEU200c_Spring08b.pdf******

http://cfmriweb.ucsd.edu/ttliu/ttliu_courses.html

http://cfmriweb.ucsd.edu/ttliu/talks/SOM276A_MRI_imageartifacts.pdf

http://cfmriweb.ucsd.edu/ttliu/talks/NEU200c_05.pdf

 

http://cfmriweb.ucsd.edu/ttliu/be280a_09/MRI_English_letter.pdf

http://www.drcmr.dk/bloch

http://www.drcmr.dk/BlochSimulator/

 

http://www.sprawls.org/resources/

http://www.sprawls.org/resources/MRIvisuals/

http://www.sprawls.org/resources/#MAGNETIC%20RESONANCE%20IMAGING

http://www.sprawls.org/ppmi2/IMGCHAR/

http://www.sprawls.org/ppmi2/BLUR/

http://www.sprawls.org/ppmi2/NOISE/

http://www.sprawls.org/ppmi2/ERAD/

 

http://www.simplyphysics.com/IntroToMRI.html   ******Find Narrative in   http://www.simplyphysics.com/page2_1.html ******

Based on the above, another slide show MRI_Physics

www.mri-tutorial.com  With Video below

http://sites.google.com/site/mritutorial/mri-physics-tutorials/1-video-intro-to-mri-physics/precession-and-resonance

 

Slide show http://fmri.ucsd.edu/ttliu/be280a_10/BE280A10_mri1.pdf

 

 

e-Book http://www.cis.rit.edu/htbooks/mri/inside.htm

 

Liely Chapter http://opax.swin.edu.au/~dliley/lectures/het408/mri.pdf

 

BME 595 J. D. Christensen MRI_1

http://en.wikibooks.org/wiki/Basic_Physics_of_Nuclear_Medicine/MRI_%26_Nuclear_Medicine


 

 

 

SlichterMagneticResonance.pdf

 

Slide 1(revised)

ChoCh9.pdf

http://www.eecs.umich.edu/~fessler/course/516/l/cm-mri-1-33.pdf

http://opax.swin.edu.au/~dliley/lectures/het408/fbe.pdf

 

Sinogram in CT scan.pdf

Filtered Back Projection.pdf

 

4328_5339Sp12TH_EXAM_I

 

WEEK 10 and 11

 

ChoCh9.pdf

ChoCh10.pdf

SlichterMagneticResonance.pdf

Slide 1(revised)

Resonance_SpinEchoSlide4(rev4)

 

Bloch equatios_Pulses_Fourier.pdf

 

WEEK 12

ChoCh10_11

 

Slice Selection Gradient

http://www.revisemri.com/

http://www.revisemri.com/tutorials/

 http://www.revisemri.com/questions/pulse_sequences/

 http://www.mritutor.org/mritutor/pulseseq.htm

http://www.revisemri.com/questions/pulse_sequences/se_ge_differences

 

 

http://www.e-radiography.net/mrict/fund%20mr2/fundmri%202.htm  T1, T2

 

http://eeweb.poly.edu/~yao/EL5823/MRI_instrumentation_ch13.pdf

 

http://www.imaios.com/en/e-Courses/e-MRI/

 

http://www.imaios.com/en/e-Courses/e-MRI/NMR

http://www.imaios.com/en/e-Courses/e-MRI/NMR/nuclear-spin

http://www.imaios.com/en/e-Courses/e-MRI/NMR/Precession-and-Larmor-frequency

http://www.imaios.com/en/e-Courses/e-MRI/NMR/Net-magnetization

http://www.imaios.com/en/e-Courses/e-MRI/NMR/Magnetic-Resonance

http://www.imaios.com/en/e-Courses/e-MRI/NMR/Excitation

http://www.imaios.com/en/e-Courses/e-MRI/NMR/Relaxation-nmr

 

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/Signal-recording

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/90-RF-pulse

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/180-RF-pulse

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/Spin-echo-TR-TE

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/TE-and-T2-weighting

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/Signal-weighting **

http://www.imaios.com/en/e-Courses/e-MRI/MRI-signal-contrast/Tissue-contrast

 

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Spatial-encoding-intro

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Magnetic-field-gradients

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Magnetic-field-gradients

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Slice-select

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Phase-encoding

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Frequency-encoding

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/Interpreting-spatial-encoding-in-MRI

http://www.imaios.com/en/e-Courses/e-MRI/Signal-spatial-encoding/3D-spatial-encoding

 

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/Introduction

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/Fourier-transform

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/spatial-frequency

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/2D-Fourier-transform

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/K-space

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/Gradients-and-spatial-frequency

http://www.imaios.com/en/e-Courses/e-MRI/The-Physics-behind-it-all/Spatial-frequency-image-contrast-and-resolution

 

 

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/MRI-sequences

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/sequence-characteristics

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/Sequence-classification

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/Sequences-acronyms

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/Spin-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/Fast-Spin-Echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/Ultrafast-spin-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/inversion-recovery-stir-flair

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/gradient-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/ultrafast-spoiled-gradient-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/steady-state-gradient-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/t2-enhanced-steady-state-gradient-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/balanced-gradient-echo

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/echo-planar-imaging

http://www.imaios.com/en/e-Courses/e-MRI/MRI-Sequences/hybrid-echo

 

http://www.imaios.com/en/e-Courses/e-MRI/Improving-MRI-contrast-Imaging-water-and-fat

http://www.imaios.com/en/e-Courses/e-MRI/Improving-MRI-contrast-Contrast-agents

http://www.imaios.com/en/e-Courses/e-MRI/Improving-MRI-contrast-Contrast-agents/contrast-agents

 

K–Space

K-Space Tool

How K-Space Works

How K-Space Works tutorial

MRI T1_T2

 

ee4328-5339Spring12/ReviseMRI T2star.pdf

ee4328-5339Spring12/Ch 3-5 MRI Contrast Spatial Localization.ppt

ee4328-5339Spring12/Bloch equatios_Pulses_Fourier.pdf

ee4328-5339Spring12/MRI T1_T2.docx

ee4328-5339Spring12/Resonance_SpinEchoSlide4(rev4).ppt

ee4328-5339Spring12/ReviseMRI T2star.pdf

ee4328-5339Spring12/Slice Selection Gradient.docx

http://cfmi.georgetown.edu/get_file.php?file=50

ee4328-5339Spring12/Ultrasound.pptx

ee4328-5339Spring12/MRI T1_T2.docx

ee4328-5339Spring12/Ultrasound 2 _from D_Nol_l U _Mich.pptx

 

ee4328-5339Spring12/From CFMI Vanmeter.docx

 

 

WEEK 13

http://www.brooksidepress.org/Products/Military_OBGYN/Ultrasound/basic_ultrasound.htm

http://www.cs.sunysb.edu/~mueller/teaching/cse377/ultrasound.pdf

Application of Ultrasound in medicine:

http://en.wikipedia.org/wiki/Medical_ultrasonography

 

SwinburneUof Tech DavidLiley_ultrasound.pdf

SwinburneUof Tech DavidLiley_usisd.pdf

SwinburneUof Tech DavidLiley_doppler.pdf

http://web.eecs.umich.edu/~dnoll/BME516/us%20notes%201.pdf

http://web.eecs.umich.edu/~dnoll/BME516/us%20notes%202.pdf

WEEK 14

 

Introduction:

 

http://www.echo-web.com/secure/echo-202-free/echo202-1-body.asp?code=free

http://www.cs.sunysb.edu/~mueller/teaching/cse377/ultrasound.pdf

 

Ultrasound System (parameters, focusing, steering, and Math)

http://opax.swin.edu.au/~dliley/lectures/het408/usisd.pdf

Ultrasound.pptx

Ultrasound 2 _from D_Nol_l U _Mich.pptx

 

Beam formaing, Image formation

http://dukemil.bme.duke.edu/rsna07/RC632B.pdf

Doppler

http://radiographics.rsna.org/content/23/5/1315.full.pdf+html

 

Computed Ultrasound Tomography

http://www.cs.sunysb.edu/~mueller/teaching/cse377/US_09.pdf

 

 

http://www.cis.rit.edu/research/biomedical/ultrasoundintro/ultraintro.html

http://www.criticalecho.com/content/tutorial-1-basic-physics-ultrasound-and-doppler-phenomenon

http://www.criticalecho.com/content/tutorial-10-basic-physics-ultrasound-and-doppler-phenomenon

 

 

WEEK 15

 

http://www.cs.sunysb.edu/~mueller/teaching/cse377/nuclear.pdf

 

http://radiographics.rsna.org/content/15/4/975.full.pdf+html

 

http://radiographics.rsna.org/content/15/5/1179.full.pdf+html

 

http://radiographics.rsna.org/content/16/1/173.full.pdf+html

 

http://opax.swin.edu.au/~dliley/lectures/het408/radio.pdf

 

 

 

ee4328-5339Spring12/Biomedical Imaging Applications of Light.pdf

 

http://www.drbio.cornell.edu/ApplicationNotes/SHG_Imaging_FvsB.pdf

 

Dr Dave OCT_module1.pdf

 

 

========================================

http://www.cis.rit.edu/htbooks/mri/

http://www.eecs.umich.edu/~fessler/course/516/index.html

http://fmri.ucsd.edu/ttliu/BE280A_10.html

 

http://engineering.dartmouth.edu/courses/engs167/

 

http://www.eecs.umich.edu/~dnoll/BME516/

 http://opax.swin.edu.au/~dliley/lectures/het408/het408.html

 http://opax.swin.edu.au/~dliley/lectures/het408/links.html

http://opax.swin.edu.au/~dliley/lectures/het408/backproj.pdf

 

http://www.cs.sunysb.edu/~mueller/teaching/cse377/mriImaging.pdf

 

http://www.cs.sunysb.edu/~mueller/teaching/cse377/

 

========================================

http://en.wikipedia.org/wiki/Radon_transform

http://mathworld.wolfram.com/RadonTransform.html

http://eivind.imm.dtu.dk/staff/ptoft/Radon/Radon.html

http://rsbweb.nih.gov/ij/plugins/radon-transform.html

http://www-math.mit.edu/~helgason/Radonbook.pdf

http://www.mathworks.com/help/toolbox/images/f21-25938.html

http://www.impactscan.org/slides/xrayct/

http://www.sprawls.org/resources/CTIMG/module.htm

http://www.physics.ubc.ca/~mirg/home/tutorial/fbp_recon.html

http://beige.ucs.indiana.edu/B673/node19.html  ****

http://beige.ucs.indiana.edu/B673/node20.html

 

http://www.aapm.org/meetings/99AM/pdf/2806-57576.pdf

 

 

 

Magnetic Resonance Imaging:

 

http://fmri.ucsd.edu/ttliu/be280a_05/BE280A_05_mri4_3s.pdf

 

 

http://www.revisemri.com/

 

 

http://www.mr-tip.com/serv1.php

 

 

http://www.mr-tip.com/serv1.php?type=db1&dbs=Pulse%20Sequence

 

 

http://www.ispub.com/journal/the_internet_journal_of_radiology/volume_2_number_1_55/article_printable/quantitative_magnetic_resonance_imaging_with_the_mixed_turbo_spin_echo_pulse_sequence_a_validation_study.html

http://www.chem.queensu.ca/facilities/nmr/nmr/webcourse/echo.htm

http://chem4823.usask.ca/hardware.html#Pulse

 

SwinburneDavidLiley_mri.pdf

 

http://chem4823.usask.ca/pulseseq.html

 

The Basics of MRI.url   [ http://www.cis.rit.edu/htbooks/mri/inside.htm ]

 

http://rad.usuhs.mil/rad/handouts/fletcher/fletcher/

NMR-Slichter.pdf

NMR-JIN

Spin Echo I

Spin Echo II

T1 and T2  Weighting.doc

Magnetic Resonance Imaging Links

Ultrasound Imaging:

http://www.indyrad.iupui.edu/public/lectures/physics/10ultras/

SwinburneUof Tech DavidLiley_ultrasound.pdf

SwinburneUof Tech DavidLiley_usisd.pdf

SwinburneUof Tech DavidLiley_doppler.pdf

 

http://dukemil.egr.duke.edu/Ultrasound/k-space/

http://fourier.eng.hmc.edu/e101/

http://fourier.eng.hmc.edu/e101/lectures/

http://fourier.eng.hmc.edu/e101/lectures/Image_Processing/

http://fourier.eng.hmc.edu/e101/lectures/Image_Processing/node6.html

http://en.wikipedia.org/wiki/Fourier_transform

http://www.cs.toronto.edu/~jepson/csc320/

http://www.cs.toronto.edu/~jepson/csc320/tutorials/matlabintro1.m

http://sepwww.stanford.edu/sep/prof/pvi/dft/paper_html/node17.html

http://sepwww.stanford.edu/sep/prof/pvi/dft/paper_html/node16.html

http://www.cs.unm.edu/~brayer/vision/fourier.html

http://www.cs.unm.edu/~brayer/vision/perception.html

http://cnyack.homestead.com/files/idxpages.htm

http://cnyack.homestead.com/files/artran/ft2dint1.htm

http://cnyack.homestead.com/files/artran/ft2dxy1.htm

19%20Nuclear%20Medicine.pdf

http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay2.pdf

http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay1b.pdf

http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay1a.pdf

http://trshare.triumf.ca/~fretiere/TSI07/Talk/

 

 

http://www.eecs.umich.edu/~dnoll/BME516/

http://www.eecs.umich.edu/~dnoll/BME516/intro.pdf

 http://www.eecs.umich.edu/~dnoll/BME516/ftnotes.pdf

http://www.eecs.umich.edu/~dnoll/BME516/us%20notes%201.pdf

 http://www.eecs.umich.edu/~dnoll/BME516/us%20notes%202.pdf

http://www.eecs.umich.edu/~dnoll/BME516/us%20notes%203.pdf

http://www.eecs.umich.edu/~dnoll/BME516/ect.pdf

http://www.nap.edu/openbook.php?record_id=5066

http://www.eecs.umich.edu/~dnoll/BME516_04/

http://www.eecs.umich.edu/~fessler/course/516/index.html

http://www.eecs.umich.edu/~fessler/course/516/index.html

 

 

http://www.nap.edu/openbook.php?booksearch=1&term=Ultrasound&record_id=5066&bottom_Search+This+Book.x=35&bottom_Search+This+Book.y=31

That book formatted as a pdf file

The MRI chapter of that book

http://www.mathworks.com/academia/student_version/

 http://www.eecs.umich.edu/~dnoll/BME516/us%20notes%202.pdf

http://farside.ph.utexas.edu/teaching/qm/lectures/lectures.html

http://farside.ph.utexas.edu/teaching/qm/lectures/node3.html

WEEK 10:

ChoCh10.pdf

NMR-Slichter.pdf

T1 and T2  Weighting.doc

 

 

WEEK 11:

K–Space

K-Space Tool

How K-Space Works

How K-Space Works tutorial

 

 

SlichterMagneticResonance.pdf

http://farside.ph.utexas.edu/teaching/qm/lectures/node44.html

 

http://www.revisemri.com/tutorials/

http://www.revisemri.com/

Many Physics Topics                       http://www.colorado.edu/physics/2000/index.pl?Type=TOC

 

SLICHTER 2nd edition:

http://books.google.com/books?id=zgnrRkaIhFoC&pg=PA169&lpg=PA169&dq=magnetic+resonance+and+density+matrix&source=bl&ots=xTCBsVXxNZ&sig=CSl-Et9badExJ3ewA6N29ctM3bE&hl=en&sa=X&ei=vsbkUJDxFeai2QX-vYCADw&ved=0CD4Q6AEwAQ#v=onepage&q=magnetic%20resonance%20and%20density%20matrix&f=false

 

http://www.bioc.aecom.yu.edu/labs/girvlab/nmr/course/COURSE_2012/chapter5.pdf

http://www.bioc.aecom.yu.edu/labs/girvlab/nmr/course/syllabus.html

http://inst.nuc.berkeley.edu/NE107/Lectures/MRI_III_Contrast_NE107_Fall10.pdf

 

For Later:

 

Tansmission Imaging CT mostly x-ray     http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay1a.pdf

 

Nuclear Medicine SPECT Pet etc.         http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay1b.pdf

Multi Modality Imaging                          http://trshare.triumf.ca/~fretiere/TSI07/Talk/LecomteDay2.pdf

Nuclear Imaging and SPECT                 http://engineering.dartmouth.edu/courses/engs167/19%20Nuclear%20Medicine.pdf

 

PET                                                      http://engineering.dartmouth.edu/courses/engs167/20%20PET%20Imaging.pdf

 

MATLAB Tutorial    http://www.engin.umich.edu/group/ctm/home.text.html

http://www.mathworks.com/academia/student_version/

 

Image Processing      http://en.wikipedia.org/wiki/Histogram_equalization

https://www-ee.uta.edu/Online/Alavi/ee5359_bme5300/2006spring/medical_image_processing_1.pdf

 

ee4328-5339Spring12/histogram_equalization.pdf

 

Computed Tomography Simple              http://www.colorado.edu/physics/2000/tomography/projections.html

 

ee4328-5339Spring12/2dCylindricalFourier.PDF

 

Linear systems and Image Processing Learning Resources

http://homepages.inf.ed.ac.uk/rbf/HIPR2/hipr_top.htm

 

Joy of Convolution

http://www.ysbl.york.ac.uk/~cowtan/fourier/fourier.html

http://www.ysbl.york.ac.uk/~cowtan/fourier/ftheory.html

 

ee5359_bme5300/2006spring/Signals & Systems Med-Img.pdf

 

http://www.prosig.com/signal-processing/FourierAnalysis.pdf

 

http://www.sprawls.org/ppmi2/ERAD/#THE%20QUANTUM%20NATURE%20OF%20RADIATION

 

Image Quality

http://cfmriweb.ucsd.edu/ttliu/talks/imagequality1a.pdf

http://cfmriweb.ucsd.edu/ttliu/talks/imagequality2b.pdf

 

RADON

 

http://eecourses.technion.ac.il/049029/presentations/RadonTransform%20-%20slides.pdf

http://oftankonyv.reak.bme.hu/tiki-index.php?page=The+Filtered+Backprojection

 http://oftankonyv.reak.bme.hu/tiki-index.php?

http://www.whitman.edu/mathematics/SeniorProjectArchive/2011/SeniorProject_KaileyBolles.pdf

http://homepages.inf.ed.ac.uk/rbf/CVonline/LOCAL_COPIES/AV0405/HAYDEN/Slice_Reconstruction.html

http://www.clear.rice.edu/elec431/projects96/DSP/bpanalysis.html

http://opax.swin.edu.au/~dliley/lectures/het408/backproj.pdf

http://www.rose-hulman.edu/~bryan/invprobs/talk4.pd 

http://www.mathworks.com/help/images/ref/iradon.html 

http://www.ttu.ee/public/t/Tehnomeedikum/Instituudid/Biomeditsiinitehnika_instituut/Oppetoo/Oppematerjalid/teine/Tallin_III_reconstr_from_proj_c1.pdf

 http://www.ms.uky.edu/~rwalker/research/radon_inversion_web.pdf

 http://www.physics.nyu.edu/grierlab/idl_html_help/R3.html

 http://www-rcf.usc.edu/~pochen/InverseScattering_Lessons/Lesson2.pptx

 

TT Liu

 

  • Introductory Lecture (9/21/06)
  • X-Rays/CT Lecture 1 (9/21/06)
  • X-Rays/CT Lecture 2 (9/26/06)
  • X-Rays/CT Lecture 3 (9/28/06)
  • X-Rays/CT Lecture 4 (10/03/06)
  • CT/Fourier Lecture 1 (10/05/06 & 10/10/06)  http://cfmriweb.ucsd.edu/ttliu/be280a_06/BE280A_06_ctf1.pdf
  • CT/Fourier Lecture 2 (10/10/06 & 10/12/06)
  • CT/Fourier Lecture 3 (10/12/06 & 10/17/06)
  • CT/Fourier Lecture 4 (10/17/06 & 10/19/06)
  • MRI

  • Signals and Fourier Transforms Lecture (10/3/12)
  • MRI Lecture 1 (10/8/12)
  • MRI Lecture 2 (10/10/12)
  • MRI Lecture 3 (10/15/12)
  • MRI Lecture 4 (10/17/12)
  • MRI Lecture 5 (10/24/12)
  • MRI Lecture 6 (10/29/12)
  • MRI Lecture 7 (10/31/12)
  • MRI Lecture 2 (11/14/06) 
  • MRI Lecture 3 (11/16/06)
  •  MRI Lecture 3a (11/16/06)
  • MRI Lecture 4 (11/20/06)
  • MRI Lecture 5 (11/28/06)
  • MRI Lecture 6 (11/30/06)
  • Ultrasound

  • Ultrasound Lecture 1 (10/19/06)
  • Ultrasound Lecture 2 (10/23/06 & 11/2/06)
  • Ultrasound Lecture 3 (11/2/06)
  • Ultrasound Lecture 1 (11/25/08 & 12/2/08)
  • Ultrasound Lecture 2 (12/2/08)
  • US Lecture 1 (11/24/09)
  • US Lecture 2 (12/01/09)
  •  

    Fessler

    http://web.eecs.umich.edu/~fessler/course/516/index.html

    http://web.eecs.umich.edu/~fessler/course/516/l/cm-mri-1-14.pdf

    http://web.eecs.umich.edu/~fessler/course/516/l/cm-mri-15-22.pdf

    http://web.eecs.umich.edu/~fessler/course/516/l/cm-mri-1-33.pdf

    http://web.eecs.umich.edu/~fessler/course/516/l/cm-mri-34-41.pdf

    http://web.eecs.umich.edu/~fessler/course/516/l/cm-mri-38-new.pdf

     


     

    spin dynamics  http://ti.fh-bielefeld.de/~cschroed/spindyntutor.htm

    http://physics.bu.edu/~redner/896/

    http://en.wikipedia.org/wiki/Spin%E2%80%93spin_relaxation

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_4.pdf

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_2.pdf

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_1.pdf

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_3.pdf

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_6.pdf

    http://www-keeler.ch.cam.ac.uk/lectures/understanding/chapter_8.pdf

    http://web.uconn.edu/~ch351vc/pdfs/spin1.pdf

     

    http://en.wikipedia.org/wiki/Two-state_quantum_system

    http://en.wikipedia.org/wiki/Rabi_problem

     

    http://en.wikipedia.org/wiki/Bloch_equations

    http://www.physicsinsights.org/dipole_field_1.html

    http://www.physicsinsights.org/index.html

    http://www.physicsinsights.org/math_physics_2.html

    TheLinear Twins

    TheAccelerating

    Porthole View,Looking Forward

    The RevolvingClock

    The RevolvingTwins

    The RevolvingAstronaut

    The Sagnac
    Effect

    Magnetism

    Force on a Dipole http://www.physicsinsights.org/force_on_dipole_1.html

    http://www.physicsinsights.org/dipole_as_charges_1.html

    http://www.physicsinsights.org/moving_charge_1.html

    http://www.physicsinsights.org/lagrange_1.html

    http://www.physicsinsights.org/math_physics_1.html

    http://www.physicsinsights.org/blackbodies-1.html#mozTocId483990